Answer some questions here because it's not clear to me you have yet:

Does this vibration happen in neutral when reving the bike up?
Had this happened since you bought the bike?
What, if anything, has been changed from OEM regardless of how long you've owned it?

 

Standing or riding it doesn’t matter
it is difficult to answer , I noticed it only when I bring it to my town from Moscow .
And everything was same it was 100 % stock , and after I made stage 1 . Vibration is the same

Does this vibration happen in neutral when reving the bike up?
Had this happened since you bought the bike?
What, if anything, has been changed from OEM regardless of how long you've owned it?[/QUOTE]

 

Check crank run out.