When you click on links to various merchants on this site and make a purchase, this can result in this site earning a commission. Affiliate programs and affiliations include, but are not limited to, the eBay Partner Network.
I am not experienced with the Mikuni carb but as a general rule if the engine backfires, pops or spits through the air cleaner this indicates a lean condition and the intermediate jet should be larger. Backfiring through the exhaust indicates a rich condition. Stumbling or burbling or feeling sluggish on acceleration probably means the main jet needs to be leaner. My limited knowledge is based or running S&S carbs. If you think you have a problem see if you can get an instruction manual from Mikuni.
I doubt if you will have these problems resulting from just this exhaust change. Good luck.